Forensic & Investigative Sciences Program Theses and Dissertations

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Paper Spray-Mass Spectrometry Coupled with Pressure Sensitive Adhesive-Based Collection for the Recovery and Detection of Drugs of Abuse
(2023-08) Prunty, Sarah G.; Manicke, Nicholas; Goodpaster, John; McKenna, Josiah
Illicit drug abuse is a widespread issue in the United States and worldwide. Many methods seek to ease the analytical workload required to collect, analyze, and identify these drugs. Paper spray-mass spectrometry (PS-MS) is one response to this analytical workload as it offers a rapid, affordable, and simple means for drug identification by mass spectrometry. This work centers on the use of pressure-sensitive adhesive (PSA) lined paper as a PS-MS substrate for drug recovery and detection. The use of PSA paper as a sampling and analysis substrate has been previously established but is expanded herein with new capabilities and applications. Chapter 2 introduces the combination of color tests followed by PS-MS for presumptive and confirmatory drug identification. Three color tests (cobalt thiocyanate, Simon, or Marquis) were performed on the PSA paper with subsequent drug confirmation occurring by PS-MS. Chapter 3 examines the use of PSA paper and PS-MS for the recovery and detection of fentanyl, fentanyl precursors, and analogs from shipping-related surfaces and in the presence of high amounts of cutting agents. The use of a cartridge that accommodates a full-sized PSA paper ticket was also explored for drug detection. Chapter 4 assesses PS-MS with PSA paper on portable MS instrumentation. Analyte recovery and carryover as well as instrument robustness were evaluated. The color test and PS-MS protocol examined in Chapter 2 was also successfully applied to a portable MS instrument. Application of PS-MS to the portable system highlights the potential fieldability of the technique.
Electrochemical Characterization of Common Cutting Agents Found in Illicit Drugs
(2023-08) Bloom, George; Deiss, Frederique; Manicke, Nicholas; Rainey-Beymer, Christina
Nationwide use of illicit drugs has continued to rise over the last few decades, with more than a two-fold increase in global seizures from 2016 and 2020. Most seized drug samples are complex mixtures of drugs and cutting agents, which can complicate the detection and quantification of the illicit drugs in the sample. The presence of these cutting agents can however be beneficial for source tracing purposes, as the majority of cutting agents are selected based on availability in the area where the bulk drug was prepared. The goal of this work was to conduct a systematic study of the electrochemical characteristics of the most common cutting agents found in illicit drugs using unmodified, commercially available glassy carbon electrodes. The long-term goal is to establish an extensive database of electrochemical characterizations of cutting agents and illicit drugs encountered by law enforcement using unmodified, commercially available electrodes to help expand the developing field of forensic electrochemical analyses. This database could then be referenced for the identification of unknown samples to determine the presence of possible illicit drugs and cutting agents that are present to help guide the analyst in further testing. The standard methods for drug detection include a combination of laboratory testing and field-deployable assays ranging from colorimetric tests to gas chromatography-mass spectrometry instrumentation. These detection methods, as well as relevant literature were investigated in Chapter 1. The most used screening methods for illicit drugs are colorimetric tests; however, these assays are prone to false positives. Chapter 1 introduces the existing applications and current research efforts in forensic electrochemistry by describing relevant electrochemical sensors and methods and examining in particular their performance regarding accuracy, sensitivity, and low-cost claims. This overview highlights the broad possibilities of electrochemical analysis in forensics as well as the opportunities when applied to detection and quantification of illicit drugs, demonstrating the current needs for more systematic and consistent characterizations of cutting agents found in seized-drug samples. Chapter 2 details the material, reagents, and experimental conditions, showing their simplicity, and the standard electrochemical and preparative equipment used geared towards an easy implementation in any analytical laboratory. Chapter 3 describes the systematic voltametric characterizations performed on thirteen common cutting agents: phenacetin hydrochloride, levamisole hydrochloride, diphenhydramine hydrochloride, quinine, acetaminophen, ascorbic acid, caffeine, lactose, inositol, mannitol, glucose, sodium bicarbonate and calcium carbonate. In addition to the common, information-rich cyclic voltammetry (CV), differential pulse voltammetry (DPV) and square wave voltammetry (SWV) were used as these pulsed electroanalytical methods are typically considered more sensitive than CV and often employed for quantitative analyses of species present at low concentrations (Chapter 3). Overall, DPV resulted in voltammograms with peaks shaped closer to the ideal redox peaks, also referred to as ‘better defined’, thus enhancing the analytical performance of the assay. For example, In the analysis of diphenhydramine hydrochloride, DPV permitted the measurement of an oxidation with a peak displayed at 1.0 V vs Ag/AgCl, which was not observable when performing CV or SWV. On the other hand, SWV provided noticeably greater intensities of peak current, which allowed for a better detection of the difficult-to-observe redox reactions of quinine occurring at -0.4, 0.0 and 0.4 V vs Ag/AgCl. Some chemical species when present in seized drugs can alter the pH of the tested samples, such as ascorbic acid. Changes in pH will impact the redox activity of the pH-dependent electroactive species present in a sample, thus we investigated how pH of the solvent affected the observation of the redox peaks of those susceptible cutting agents, namely ascorbic acid, quinine, diphenhydramine hydrochloride, and levamisole hydrochloride (Chapter 4). Of particular interest was a significant change in the electrochemical characterization of these species when the pH was varied around their pKa values. Additionally, the composition of the solvent, or supporting electrolyte (SE) solution, can in some cases result in interactions with the analytes in the sample; the study of caffeine with different SE in Chapter 4 illustrates this situation. Specifically, sulfuric acid was the most suited SE of those tested for caffeine analysis. The impact of successive voltametric scans, on the analysis of chemical species were also investigated, using acetaminophen and quinine, demonstrating the development of additional redox peaks in some situations that could provide additional elements towards a more individualized electrochemical profile for cutting agents (Chapter 4). The influence of the material of the working electrode on the electrochemical characterization of cutting agents was explored. Solutions of ascorbic acid, acetaminophen, quinine, and diphenhydramine hydrochloride were electrochemically characterized using a glassy carbon and a platinum working electrode, while ascorbic acid was also characterized on gold and silver electrodes. These examples demonstrate the adaptability of this electroanalytical method with various commonly used electrodes. (Chapter 4). In Chapter 5, we applied similar electrochemical method to the identification of cutting agents and illicit drugs in two-component mixtures. Specifically, these trials included mixtures of fentanyl with a cutting agent at a relative ratio of 1 : 100, using as cutting agents ascorbic acid, diphenhydramine hydrochloride, or glucose, demonstrating the ability of this simple electrochemical method using common commercial electrodes to simultaneously detect illicit drugs and cutting agents.
Utilization of Blow Flies (Phormia regina) as Vertebrate Resource Diversity Indicators
(2022-08) Jones, Ashton Brooke; Picard, Christine; Walsh, Susan; Wells, Jeffrey
Blow flies are often utilized in the field of forensic science due to their ability to aid in the estimation of time since death. Currently, estimations of postmortem interval require assumptions to be made and are prone to a margin of error, prompting research that may contribute to more accurate postmortem interval estimations and help to fill in the gaps of unknown information. Blow flies are necrophagous, feeding on feces and carrion, and therefore, are constantly sampling the environment. This behavior can be exploited in order to monitor the biodiversity in an environment. Through analysis of DNA isolated from the guts of blow flies, information can be obtained regarding what animals have died in an environment, what animals are still living in that environment, and the abundance and diversity of the animals present in a specific environment. Using fly-derived ingested DNA is a viable method for vertebrate resource identification and biodiversity monitoring. Over the course of a two-summer sampling period, in and around two national parks, a total of 162 blow fly (Phormia regina) samples returned a positive vertebrate DNA identification, with 33 species identified from five animal orders. Of the total number of flies collected and analyzed, 23.58% returned a positive vertebrate species identification. The method detected both abundant and common species based on National Park surveys, as well as some uncommon or unknown to the park species. In the SE region, 9 individuals belonging to the Rodentia order, 12 individuals belonging to the Artiodactyla order, 21 individuals belonging to the Carnivora order, 1 individual belonging to the Cingulata order, and 3 individuals belonging to the Lagomorph order were detected. In the SE region, 63% of the individuals detected belonged to the common category, 14% of the individuals detected belonged to the uncommon category, and 23% of the individuals detected belonged to the not in park/unknown category. In the NW region, 42 individuals belonging to the Rodentia order, 46 individuals belonging to the Artiodactyla order, and 28 individuals belonging to the Carnivora order were detected. In the NW region, 52% of the individuals detected belonged to the abundant category, 36% of the individuals detected belonged to the common category, and 12% of the individuals detected belonged to the uncommon category. The relative biodiversity of the sampled environment can be inferred. In the SE region, the Shannon Biodiversity Index was calculated to be 2.28 with an evenness of 0.844, while in the NW region, the Shannon Biodiversity Index was calculated to be 2.79 with an evenness of 0.855. Unsurprisingly, there was greater biodiversity in the Northwest Park samples than in the Southeast Park samples. Additionally, the ideal weather conditions for blow fly collection were determined be at a temperature of between 60- and 80-degrees Fahrenheit, a relative humidity between 50% and 60%, no precipitation, and a wind speed between 2 and 8 miles per hour. This information has further implications in the field of forensic science, specifically dealing with wildlife forensics, pathogen distributions, and can help to improve accuracy in regards to postmortem interval (PMI) estimations.
The Detection and Identification of Explosives by Canines and Chemical Instrumentation
(2022-05) Reavis, Madison Dylan; Goodpaster, John V.; Manicke, Nicholas; Bors, Dana
With bombings in the United States on the rise for the first time since 2016, the detection and identification of explosives remains of pertinent interest to law enforcement agencies. This work presents two soon-to-be published research articles that focus on the detection and identification of explosives by both chemical instrumentation and canines. The first article, Quantitative Analysis of Smokeless Powder Particles in Post-Blast Debris via Gas Chromatography/Vacuum Ultraviolet Spectroscopy (GC/VUV), utilizes gas chromatography/vacuum ultraviolet spectroscopy (GC/VUV) to determine the difference in chemical composition of two smokeless powders in both pre- and post-blast conditions. The compounds of interest in this study were nitroglycerin, 2,4- dinitrotoluene, diphenylamine, ethyl centralite, and di-n-butyl phthalate. Concentration changes between pre- and post-blast smokeless powder particles were determined as well as microscopic differences between pre- and post-blast debris for both smokeless powders in all devices. To our knowledge, this is the first use of GC/VUV for the quantification of explosives. The second article, An Odor-Permeable Membrane Device for the Storage of Canine Training Aids, proposes the use of an odor-permeable membrane device (OPMD) as a standardized storage method for canine training aids. It is hypothesized that the OPMD would minimize cross-contamination between training aids, and that the OPMD could be used for canine training as well as storage. The goal of this research is to use flux and evaporation rate to quantify the explosive odor that escapes from the OPMD compared to unconfined explosives. Preliminary data suggests that there is an exponential relationship between relative boiling point and evaporation rate. It has been determined that compounds with higher boiling points have lower evaporation rates than compounds that have lower boiling points. The materials studied thus far are known odor compounds produced by explosive formulations. These include nitromethane, nitroethane, 1- nitropropane, r-limonene, and toluene.
Electrochemical Characterization of Fentanyl for Forensic Analysis
(2021-08) Sellnau, Natalie; Deiss, Frederique; Goodpaster, John; Manicke, Nicholas
The use and abuse of fentanyl has risen drastically over the last several decades. The abuse of this substance has created a hazardous situation for law enforcement and first responders because they could arrive at locations and not necessarily know that they will encounter fentanyl or a fentanyl analog. Fentanyl analogs are substances that have a similar structure to fentanyl, and while the analogs may have additional or altered groups on the molecule, the backbone structure remains similar. This work focus on the electrochemical characterization of fentanyl as a stepping stone for the detection of both fentanyl and later fentanyl analogs by electrochemistry. The metabolic reaction of fentanyl is an N-dealkylation to norfentanyl, occurring in the liver, and can be mimicked by electrochemistry through the irreversible oxidation of fentanyl. This electrochemical reaction is hypothesized to generate electroactive metabolites in solution. The combination of the visualization of both the irreversible oxidation with the development of the additional metabolic electrochemical peaks would constitute a unique electrochemical signature for fentanyl and fentanyl analogs towards a universal rapid screening assay. The electrochemical behavior of fentanyl was characterized in depth using multiple electrochemical techniques such as cyclic voltammetry (CV), square wave voltammetry (SWV) and differential pulse voltammetry (DPV). The optimization of the supporting electrolyte, the potential range, and methods to decrease the background current were explored with CV. To work towards a more portable system, screen printed electrodes were used. The observation of the metabolic peaks remained challenging, and different methods were attempted to achieve it. The quantification of fentanyl was successfully demonstrated using the different electrochemical systems proposed in this work. The electrochemical characterization of fentanyl and the optimization of multiple experimental parameters were the first step in developing a universal, rapid, electrochemical sensing method for the detection of fentanyl and fentanyl analogs.
Understanding the Relationship Between HERC2 and OCA2 Variants and Iris Pigmentation Genetics
(2021-08) Wallpe, Clarissa; Walsh, Susan; Picard, Christine J.; Marrs, Kathleen A.
Externally visible characteristics (EVCs) predicted from an unknown sample of DNA are particularly useful in forensics as they can provide information beyond that of an STR profile. Current EVCs which are highly studied and well-predicted include iris, hair, and skin color. Notably, models predicting iris color, such as IrisPlex, are the most accurate with up to ~95% accuracy; however, some inaccurate predictions occur, as is evidenced by the ~5%. Often, these are due to green or hazel eyes, which are frequently viewed as intermediate. Though, some of the inaccurate predictions are due to true-blue being predicted as brown and vice versa. Previous research has theorized the possibility of two SNPs, rs12913832 and rs1800407, acting as a functional haplotype affecting iris color. rs12913832 is recognized as the most predictive SNP for iris color and highly significant in other pigmentation phenotypes; presently, rs1800407 is the second-ranked SNP in the IrisPlex 6-SNP system. Both SNPs are highly variable in Europe, where the majority of variation in iris color originates. In the present study, we explore the SNP variation present in the genetic regions of OCA2-HERC2 as well as possible haplotypes. Our research centers around the functional haplotype and the addition of SNPs to the functional haplotype. In addition, three different ways of classifying the phenotype are assessed simultaneously. First, using a 4-point categorical phenotype—blue/blue grey, blue/green yellow, hazel/light brown, and dark brown. Second, calculating a continuous scale from a quantitative phenotype in which the percentage of each categorical color has been measured. Third, using the IrisPlex 6-SNP system to predict eye color and identify individuals which have been inaccurately predicted. Exploration of the SNP and haplotype variation resulted in two SNPs for both the categorical and quantitative phenotypes which were significantly correlated with hazel/light brown—rs1448484 and rs61335644, both as independent SNPs and when assessed in a haplotype with rs1800407-rs12913832. SNP rs1448484 has been associated with skin pigmentation previously and is located in a possible transcription factor binding site. SNP rs61335644 is not presently associated with pigmentation but is in complete LD with two SNPs in and around regulatory regions present in HERC2. Finally, the addition of rs1448484 and rs61335644 into the current IrisPlex 6-SNP system slightly improved each of the tested performance metrics for hazel/light brown and dark brown. Within the inaccurately predicted phenotypes, rs1800407 is confirmed to affect both inaccurately predicted groups and is the most significant SNP. Additionally, rs121918166, a missense variant in OCA2, is the second most significant SNP in true blue predicted as brown. Both SNPs were also the two most significant haplotypes with at least one allele being derived. Therefore, the next steps should include the addition of the functional haplotype and rs121918166 into the current IrisPlex model, and further testing of rs1448484 and rs61335644 on a molecular level. Consequently, the current IrisPlex model should also be reassessed on an independent test set using the 4-point categorical scale rather than the present 3-point scale.
Paper Spray - Mass Spectrometry: Investigation of Sampling Devices for Illicit Drug Detection and Quantification
(2021-07) Nguyen, Chau Bao; Manicke, Nicholas E.; Goodpaster, John V.; Deiss, Frederique T.
Paper spray - mass spectrometry (PS-MS) has been developed as a rapid and direct ionization method for qualitative and quantitative analysis of complex samples at trace levels. In this work, different sampling devices for PS-MS were investigated to improve the assay’s simplicity and sensitivity over traditional approaches. In particular, chapter two characterizes an alternate paper substrate to enhance drug detection on surfaces like asphalt, cloth, concrete, aluminum, and glass. Analysis occurs on a single spray ticket coated with pressure-sensitive adhesive (PSA), also known as Post-it notes to detect and quantify drug residues. A PS-MS method utilizing PSA paper was developed to detect a mixture of ten drugs off of various surfaces to evaluate the qualitative and quantitative capabilities of the aforementioned substrate. After the method development on a conventional linear ion trap mass spectrometer, the assay was translated for use on a portable mass spectrometer to evaluate the suitability of the pressure-sensitive adhesive paper substrate in the field in chapter three. Chapter four introduces a sampling device combined with a snap-in solid-phase extraction (SPE) column. The new cartridge design not only inherits the functions from the first iteration SPE cartridge, including extraction and preconcentration from complex samples, but also exhibits greater flexibility in volume control and ease of use for on-site sample collection.
Critical Comparison of Total Vaporization- Solid Phase Microextraction vs Headspace- Solid Phase Microextraction
(2021-05) Train, Alexandra; Goodpaster, John; Manicke, Nicholas; Picard, Christine
Solid Phase Microextraction (SPME) is a popular sampling technique that can be paired with Gas Chromatography/Mass Spectrometry (GC-MS). SPME-GC-MS is used in forensic chemistry due to its simplification of the sample preparation process. Headspace-Solid Phase Microextraction (HS-SPME) is a technique where the sample is heated to generate volatiles in the headspace of the vial. A SPME fiber is then inserted into the vial and the compounds in the headspace will bind to the fiber. Total Vaporization- Solid Phase Microextraction (TV-SPME) is a technique that is derived from the HS-SPME technique. In Chapter 1, the critical comparison of HS-SPME and TV-SPME is discussed. Samples including marijuana, essential oils, and CBD oil were utilized to compare the two techniques. The compounds of interest in marijuana are the three main cannabinoids: cannabinol (CBN), cannabidiol (CBD), and tetrahydrocannabinol (THC). The sample preparation and GC-MS parameters were kept the same for all samples to determine which SPME technique works best for these sample types and yielded the greatest sensitivity. It was found that HS-SPME shows greater sensitivity with CBN and equivalent sensitivity with essential oils, THC and CBD. In Chapter 2, the detection of synthetic cannabinoids utilizing liquid-liquid injection as well as HS-SPME and TV-SPME is discussed. The detection of these compounds is important because this type of drug has become more prevalent in the United States because they can be chemically altered slightly so they still have the effects of a drug but can evade drug legislation. The detection of synthetic cannabinoids using liquid injection was found to be successful but detection using HS-SPME and TV-SPME was found to be unsuccessful. In Chapter 3, the analyses of real and artificial saliva utilizing HS-SPME and TV-SPME is discussed. Determining the compounds present in real saliva and artificial saliva will be of importance for future research into determining if the presence of drugs in saliva can be analyzed with these techniques. The analyses of real and artificial saliva were found to be successful using HS-SPME, without derivatization, and TV-SPME, with and without derivatization. Many of the compounds present in the real saliva were detected and were confirmed to be compounds regularly found in saliva by other scientific literature.
An investigation of genetic variability in Lucilia cuprina and Musca domestica utilizing phylogenetic and population genetic approaches
(2020-08) Doll, Laura Catherine; Picard, Christine J.; Roper, Randall; Tarone, Aaron
Forensic entomology is a subdiscipline of entomology that involves the use of insect behavior and developmental data to aid in criminal investigations. Genetic data has become increasingly important to the field as there has been a push for DNA-based species identification methods of forensically relevant insects. Genetic data can also elucidate population structure and relatedness of these insects, and such knowledge can contribute to the development of more specific datasets for insects in different regions. The first study presented here investigated the phylogenetics of sister species Lucilia cuprina and Lucilia sericata to identify possible subspecies divisions and issues with DNA-based identifications in the United States. The initial aim of this study was to identify genetic differences between specimens of L. cuprina that preferred live versus carrion flesh. Flies collected from Indiana, USA and South Africa were sequenced and analyzed. Upon sequencing of the genes COI, Period, and 28s, our results indicated that L. cuprina from Indiana possess a unique combination of nuclear and mitochondrial haplotypes that suggest a unique lineage, possibly indicating modern hybridization with L. sericata. The inability of both nuclear and mitochondrial genes to distinguish between L. cuprina and L. sericata raises questions about the capabilities of DNA-based species identifications within this genus. Additionally, the inability of these genes to distinguish between specimens that preferred live versus carrion flesh highlights a need for continued research of these behavioral differences. The second study presented here investigated the population structure and relatedness of house flies in the American southwest in relation to a civil lawsuit where neighbors of a poultry farm alleged that flies were emanating from the farm to their homes. Musca domestica (house fly) specimens were collected from the chicken farm and from locations in varying directions and distances from the farm. Amplified fragment length polymorphism (AFLP) analysis was performed and the data were used in a number of analyses. Population reallocation simulations generally indicated that samples from different locations were not genetically different enough from other locations to allocate to their true origin population over others. Kinship analysis showed differences in samples collected in a later season that indicate a genetic bottleneck over time. Population structure analysis indicated the presence of two intermixing genetic populations in the dataset. AMOVA revealed that the majority of genetic variation laid within, rather than among, populations. A Mantel test revealed no significant correlation between genetic and geographic distances. These results indicate that the M. domestica population in this region of southwestern America is large and intermixing, with no clear genetic distinctions between specimens collected at the poultry farm versus the surrounding locations. In regard to the civil lawsuit, it was not possible to conclude that the flies did not emanate from the poultry farm. In a broader perspective, these data can be utilized to develop pest management strategies in this region. Overall, the data from both studies presented here will be useful to forensic investigations, development of more specific and detailed data and identification techniques, and pest control measures.
Optimization of Marker Sets and Tools for Phenotype, Ancestry, and Identity using Genetics and Proteomics
(2019-08) Wills, Bailey; Walsh, Susan; Picard, Christine; Skalnik, David
In the forensic science community, there is a vast need for tools to help assist investigations when standard DNA profiling methods are uninformative. Methods such as Forensic DNA Phenotyping (FDP) and proteomics aims to help this problem and provide aid in investigations when other methods have been exhausted. FDP is useful by providing physical appearance information, while proteomics allows for the examination of difficult samples, such as hair, to infer human identity and ancestry. To create a “biological eye witness” or develop informative probability of identity match statistics through proteomically inferred genetic profiles, it is necessary to constantly strive to improve these methods. Currently, two developmentally validated FDP prediction assays, ‘HIrisPlex’ and ‘HIrisplex-S’, are used on the capillary electrophoresis to develop a phenotypic prediction for eye, hair, and skin color based on 41 variants. Although highly useful, these assays are limited in their ability when used on the CE due to a 25 variant per assay cap. To overcome these limitations and expand the capacities of FDP, we successfully designed and validated a massive parallel sequencing (MPS) assay for use on both the ThermoFisher Scientific Ion Torrent and Illumina MiSeq systems that incorporates all HIrisPlex-S variants into one sensitive assay. With the migration of this assay to an MPS platform, we were able to create a semi-automated pipeline to extract SNP-specific sequencing data that can then be easily uploaded to the freely accessible online phenotypic prediction tool (found at https://hirisplex.erasmusmc.nl) and a mixture deconvolution tool with built-in read count thresholds. Based on sequencing reads counts, this tool can be used to assist in the separation of difficult two-person mixture samples and outline the confidence in each genotype call. In addition to FDP, proteomic methods, specifically in hair protein analysis, opens doors and possibilities for forensic investigations when standard DNA profiling methods come up short. Here, we analyzed 233 genetically variant peptides (GVPs) within hair-associated proteins and genes for 66 individuals. We assessed the proteomic methods ability to accurately infer and detect genotypes at each of the 233 SNPs and generated statistics for the probability of identity (PID). Of these markers, 32 passed all quality control and population genetics criteria and displayed an average PID of 3.58 x 10-4. A population genetics assessment was also conducted to identify any SNP that could be used to infer ancestry and/or identity. Providing this information is valuable for the future use of this set of markers for human identification in forensic science settings.

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